PoplarV1, Main, Exploration, bibRecord, 001E70

Brenneria populi sp. nov., isolated from symptomatic bark of Populus×euramericana canker.

Identifieur interne : 001E70 ( Main/Exploration ); précédent : 001E69; suivant : 001E71

Brenneria populi sp. nov., isolated from symptomatic bark of Populus×euramericana canker.

Auteurs : Yong Li [République populaire de Chine] ; Wei Fang [République populaire de Chine] ; Han Xue [République populaire de Chine] ; Wen-Xing Liang [République populaire de Chine] ; Lai-Fa Wang [République populaire de Chine] ; Guo-Zhong Tian [République populaire de Chine] ; Xi-Zhuo Wang [République populaire de Chine] ; Cai-Li Lin [République populaire de Chine] ; Xia Li [République populaire de Chine] ; Chun-Gen Piao [République populaire de Chine]

Source :

International journal of systematic and evolutionary microbiology [ 1466-5034 ] ; 2015.

RBID : pubmed:25385993

Descripteurs français

KwdFr :
- ADN bactérien (génétique), ARN ribosomique 16S (génétique), Acides gras (composition chimique), Analyse de séquence d'ADN (MeSH), Composition en bases nucléiques (MeSH), Données de séquences moléculaires (MeSH), Enterobacteriaceae (classification), Enterobacteriaceae (génétique), Enterobacteriaceae (isolement et purification), Espagne (MeSH), Gènes bactériens (MeSH), Hybridation d'acides nucléiques (MeSH), Phylogenèse (MeSH), Populus (microbiologie), Techniques de typage bactérien (MeSH), Typage par séquençage multilocus (MeSH), Écorce (microbiologie).
MESH :
- composition chimique : Acides gras, Enterobacteriaceae.
- génétique : ADN bactérien, ARN ribosomique 16S, Enterobacteriaceae.
- isolement et purification : Enterobacteriaceae.
- microbiologie : Populus, Écorce.
- Analyse de séquence d'ADN, Composition en bases nucléiques, Données de séquences moléculaires, Espagne, Gènes bactériens, Hybridation d'acides nucléiques, Phylogenèse, Techniques de typage bactérien, Typage par séquençage multilocus.

English descriptors

KwdEn :
- Bacterial Typing Techniques (MeSH), Base Composition (MeSH), DNA, Bacterial (genetics), Enterobacteriaceae (classification), Enterobacteriaceae (genetics), Enterobacteriaceae (isolation & purification), Fatty Acids (chemistry), Genes, Bacterial (MeSH), Molecular Sequence Data (MeSH), Multilocus Sequence Typing (MeSH), Nucleic Acid Hybridization (MeSH), Phylogeny (MeSH), Plant Bark (microbiology), Populus (microbiology), RNA, Ribosomal, 16S (genetics), Sequence Analysis, DNA (MeSH), Spain (MeSH).
MESH :
- chemical , chemistry : Fatty Acids.
- chemical , genetics : DNA, Bacterial, RNA, Ribosomal, 16S.
- classification : Enterobacteriaceae.
- genetics : Enterobacteriaceae.
- isolation & purification : Enterobacteriaceae.
- microbiology : Plant Bark, Populus.
- Bacterial Typing Techniques, Base Composition, Genes, Bacterial, Molecular Sequence Data, Multilocus Sequence Typing, Nucleic Acid Hybridization, Phylogeny, Sequence Analysis, DNA, Spain.

Abstract

Five Gran-stain-negative, facultatively anaerobic, motile, bacterial strains were isolated from symptomatic bark tissue of Populus×euramericana canker. Strains grew at 4-41 °C, pH 4-10 and 0-6 % (w/v) salinity. They were positive with respect to catalase activity and negative for oxidase activity, nitrate reduction and the Voges-Proskauer reaction. Analysis of 16S rRNA gene sequences indicated that these five poplar isolates belong to the genus Brenneria, having highest sequence similarity of 95.98 % with Brenneria goodwinii LMG 26270(T). These five isolates formed a single cluster based on multilocus sequence analysis, indicating that they all belong to a single taxon within the genus Brenneria, which was confirmed by DNA-DNA hybridization. The DNA G+C content was 54.9-55.7 mol%, and the main fatty acids were C16 : 0, C18 : 1ω7c, C17 : 0 cyclo and C16 : 1ω7c/iso-C15 : 0 2-OH. Based on these results, we describe a novel species of the genus Brenneria with the proposed name Brenneria populi sp. nov. The type strain is D9-5(T) ( = CFCC 11963(T) = KCTC 42088(T)).

DOI: 10.1099/ijs.0.066068-0
PubMed: 25385993

Affiliations:

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Le document en format XML

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<term>Enterobacteriaceae (classification)</term>
<term>Enterobacteriaceae (genetics)</term>
<term>Enterobacteriaceae (isolation & purification)</term>
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<term>Nucleic Acid Hybridization (MeSH)</term>
<term>Phylogeny (MeSH)</term>
<term>Plant Bark (microbiology)</term>
<term>Populus (microbiology)</term>
<term>RNA, Ribosomal, 16S (genetics)</term>
<term>Sequence Analysis, DNA (MeSH)</term>
<term>Spain (MeSH)</term>
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<keywords scheme="KwdFr" xml:lang="fr"><term>ADN bactérien (génétique)</term>
<term>ARN ribosomique 16S (génétique)</term>
<term>Acides gras (composition chimique)</term>
<term>Analyse de séquence d'ADN (MeSH)</term>
<term>Composition en bases nucléiques (MeSH)</term>
<term>Données de séquences moléculaires (MeSH)</term>
<term>Enterobacteriaceae (classification)</term>
<term>Enterobacteriaceae (génétique)</term>
<term>Enterobacteriaceae (isolement et purification)</term>
<term>Espagne (MeSH)</term>
<term>Gènes bactériens (MeSH)</term>
<term>Hybridation d'acides nucléiques (MeSH)</term>
<term>Phylogenèse (MeSH)</term>
<term>Populus (microbiologie)</term>
<term>Techniques de typage bactérien (MeSH)</term>
<term>Typage par séquençage multilocus (MeSH)</term>
<term>Écorce (microbiologie)</term>
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<keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Fatty Acids</term>
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<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Bacterial</term>
<term>RNA, Ribosomal, 16S</term>
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<keywords scheme="MESH" qualifier="composition chimique" xml:lang="fr"><term>Acides gras</term>
<term>Enterobacteriaceae</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Enterobacteriaceae</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ADN bactérien</term>
<term>ARN ribosomique 16S</term>
<term>Enterobacteriaceae</term>
</keywords>
<keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Enterobacteriaceae</term>
</keywords>
<keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Enterobacteriaceae</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Populus</term>
<term>Écorce</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Bark</term>
<term>Populus</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Bacterial Typing Techniques</term>
<term>Base Composition</term>
<term>Genes, Bacterial</term>
<term>Molecular Sequence Data</term>
<term>Multilocus Sequence Typing</term>
<term>Nucleic Acid Hybridization</term>
<term>Phylogeny</term>
<term>Sequence Analysis, DNA</term>
<term>Spain</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence d'ADN</term>
<term>Composition en bases nucléiques</term>
<term>Données de séquences moléculaires</term>
<term>Espagne</term>
<term>Gènes bactériens</term>
<term>Hybridation d'acides nucléiques</term>
<term>Phylogenèse</term>
<term>Techniques de typage bactérien</term>
<term>Typage par séquençage multilocus</term>
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<front><div type="abstract" xml:lang="en">Five Gran-stain-negative, facultatively anaerobic, motile, bacterial strains were isolated from symptomatic bark tissue of Populus×euramericana canker. Strains grew at 4-41 °C, pH 4-10 and 0-6 % (w/v) salinity. They were positive with respect to catalase activity and negative for oxidase activity, nitrate reduction and the Voges-Proskauer reaction. Analysis of 16S rRNA gene sequences indicated that these five poplar isolates belong to the genus Brenneria, having highest sequence similarity of 95.98 % with Brenneria goodwinii LMG 26270(T). These five isolates formed a single cluster based on multilocus sequence analysis, indicating that they all belong to a single taxon within the genus Brenneria, which was confirmed by DNA-DNA hybridization. The DNA G+C content was 54.9-55.7 mol%, and the main fatty acids were C16 : 0, C18 : 1ω7c, C17 : 0 cyclo and C16 : 1ω7c/iso-C15 : 0 2-OH. Based on these results, we describe a novel species of the genus Brenneria with the proposed name Brenneria populi sp. nov. The type strain is D9-5(T) ( = CFCC 11963(T) = KCTC 42088(T)).</div>
</front>
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<Title>International journal of systematic and evolutionary microbiology</Title>
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<ArticleTitle>Brenneria populi sp. nov., isolated from symptomatic bark of Populus×euramericana canker.</ArticleTitle>
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<ELocationID EIdType="doi" ValidYN="Y">10.1099/ijs.0.066068-0</ELocationID>
<Abstract><AbstractText>Five Gran-stain-negative, facultatively anaerobic, motile, bacterial strains were isolated from symptomatic bark tissue of Populus×euramericana canker. Strains grew at 4-41 °C, pH 4-10 and 0-6 % (w/v) salinity. They were positive with respect to catalase activity and negative for oxidase activity, nitrate reduction and the Voges-Proskauer reaction. Analysis of 16S rRNA gene sequences indicated that these five poplar isolates belong to the genus Brenneria, having highest sequence similarity of 95.98 % with Brenneria goodwinii LMG 26270(T). These five isolates formed a single cluster based on multilocus sequence analysis, indicating that they all belong to a single taxon within the genus Brenneria, which was confirmed by DNA-DNA hybridization. The DNA G+C content was 54.9-55.7 mol%, and the main fatty acids were C16 : 0, C18 : 1ω7c, C17 : 0 cyclo and C16 : 1ω7c/iso-C15 : 0 2-OH. Based on these results, we describe a novel species of the genus Brenneria with the proposed name Brenneria populi sp. nov. The type strain is D9-5(T) ( = CFCC 11963(T) = KCTC 42088(T)).</AbstractText>
<CopyrightInformation>© 2015 IUMS.</CopyrightInformation>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Li</LastName>
<ForeName>Yong</ForeName>
<Initials>Y</Initials>
<AffiliationInfo><Affiliation>Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Fang</LastName>
<ForeName>Wei</ForeName>
<Initials>W</Initials>
<AffiliationInfo><Affiliation>Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Xue</LastName>
<ForeName>Han</ForeName>
<Initials>H</Initials>
<AffiliationInfo><Affiliation>Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Liang</LastName>
<ForeName>Wen-Xing</ForeName>
<Initials>WX</Initials>
<AffiliationInfo><Affiliation>Key Laboratory of Integrated Crop Pest Management of Shandong Province, College of Agronomy and Plant Protection, Qingdao Agricultural University, Qingdao 266109, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Wang</LastName>
<ForeName>Lai-Fa</ForeName>
<Initials>LF</Initials>
<AffiliationInfo><Affiliation>Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Tian</LastName>
<ForeName>Guo-Zhong</ForeName>
<Initials>GZ</Initials>
<AffiliationInfo><Affiliation>Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Wang</LastName>
<ForeName>Xi-Zhuo</ForeName>
<Initials>XZ</Initials>
<AffiliationInfo><Affiliation>Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Lin</LastName>
<ForeName>Cai-Li</ForeName>
<Initials>CL</Initials>
<AffiliationInfo><Affiliation>Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Li</LastName>
<ForeName>Xia</ForeName>
<Initials>X</Initials>
<AffiliationInfo><Affiliation>Patent Examination Cooperation Center of the Patent Office, SIPO, Beijing 100086, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Piao</LastName>
<ForeName>Chun-Gen</ForeName>
<Initials>CG</Initials>
<AffiliationInfo><Affiliation>Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091, PR China.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<DataBankList CompleteYN="Y"><DataBank><DataBankName>GENBANK</DataBankName>
<AccessionNumberList><AccessionNumber>KJ632517</AccessionNumber>
<AccessionNumber>KJ632518</AccessionNumber>
<AccessionNumber>KJ672083</AccessionNumber>
<AccessionNumber>KJ672084</AccessionNumber>
<AccessionNumber>KJ672085</AccessionNumber>
<AccessionNumber>KJ672086</AccessionNumber>
<AccessionNumber>KJ672087</AccessionNumber>
<AccessionNumber>KJ672088</AccessionNumber>
<AccessionNumber>KJ672089</AccessionNumber>
<AccessionNumber>KJ672090</AccessionNumber>
<AccessionNumber>KJ951005</AccessionNumber>
<AccessionNumber>KJ951006</AccessionNumber>
<AccessionNumber>KJ951007</AccessionNumber>
<AccessionNumber>KJ951008</AccessionNumber>
<AccessionNumber>KJ951010</AccessionNumber>
<AccessionNumber>KJ951011</AccessionNumber>
<AccessionNumber>KJ951013</AccessionNumber>
<AccessionNumber>KJ951014</AccessionNumber>
<AccessionNumber>KJ951016</AccessionNumber>
<AccessionNumber>KJ951017</AccessionNumber>
<AccessionNumber>KJ951019</AccessionNumber>
<AccessionNumber>KM032271</AccessionNumber>
</AccessionNumberList>
</DataBank>
</DataBankList>
<PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType>
<PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic"><Year>2014</Year>
<Month>11</Month>
<Day>10</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo><Country>England</Country>
<MedlineTA>Int J Syst Evol Microbiol</MedlineTA>
<NlmUniqueID>100899600</NlmUniqueID>
<ISSNLinking>1466-5026</ISSNLinking>
</MedlineJournalInfo>
<ChemicalList><Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D004269">DNA, Bacterial</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D005227">Fatty Acids</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D012336">RNA, Ribosomal, 16S</NameOfSubstance>
</Chemical>
</ChemicalList>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList><MeshHeading><DescriptorName UI="D015373" MajorTopicYN="N">Bacterial Typing Techniques</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D001482" MajorTopicYN="N">Base Composition</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D004269" MajorTopicYN="N">DNA, Bacterial</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D004755" MajorTopicYN="N">Enterobacteriaceae</DescriptorName>
<QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D005227" MajorTopicYN="N">Fatty Acids</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D005798" MajorTopicYN="N">Genes, Bacterial</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D058885" MajorTopicYN="N">Multilocus Sequence Typing</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D009693" MajorTopicYN="N">Nucleic Acid Hybridization</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010802" MajorTopicYN="Y">Phylogeny</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D024301" MajorTopicYN="N">Plant Bark</DescriptorName>
<QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName>
<QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D012336" MajorTopicYN="N">RNA, Ribosomal, 16S</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D013030" MajorTopicYN="N">Spain</DescriptorName>
</MeshHeading>
</MeshHeadingList>
</MedlineCitation>
<PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2014</Year>
<Month>11</Month>
<Day>12</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="pubmed"><Year>2014</Year>
<Month>11</Month>
<Day>12</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline"><Year>2015</Year>
<Month>4</Month>
<Day>10</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>ppublish</PublicationStatus>
<ArticleIdList><ArticleId IdType="pubmed">25385993</ArticleId>
<ArticleId IdType="doi">10.1099/ijs.0.066068-0</ArticleId>
</ArticleIdList>
</PubmedData>
</pubmed>
<affiliations><list><country><li>République populaire de Chine</li>
</country>
<settlement><li>Pékin</li>
</settlement>
</list>
<tree><country name="République populaire de Chine"><noRegion><name sortKey="Li, Yong" sort="Li, Yong" uniqKey="Li Y" first="Yong" last="Li">Yong Li</name>
</noRegion>
<name sortKey="Fang, Wei" sort="Fang, Wei" uniqKey="Fang W" first="Wei" last="Fang">Wei Fang</name>
<name sortKey="Li, Xia" sort="Li, Xia" uniqKey="Li X" first="Xia" last="Li">Xia Li</name>
<name sortKey="Liang, Wen Xing" sort="Liang, Wen Xing" uniqKey="Liang W" first="Wen-Xing" last="Liang">Wen-Xing Liang</name>
<name sortKey="Lin, Cai Li" sort="Lin, Cai Li" uniqKey="Lin C" first="Cai-Li" last="Lin">Cai-Li Lin</name>
<name sortKey="Piao, Chun Gen" sort="Piao, Chun Gen" uniqKey="Piao C" first="Chun-Gen" last="Piao">Chun-Gen Piao</name>
<name sortKey="Tian, Guo Zhong" sort="Tian, Guo Zhong" uniqKey="Tian G" first="Guo-Zhong" last="Tian">Guo-Zhong Tian</name>
<name sortKey="Wang, Lai Fa" sort="Wang, Lai Fa" uniqKey="Wang L" first="Lai-Fa" last="Wang">Lai-Fa Wang</name>
<name sortKey="Wang, Xi Zhuo" sort="Wang, Xi Zhuo" uniqKey="Wang X" first="Xi-Zhuo" last="Wang">Xi-Zhuo Wang</name>
<name sortKey="Xue, Han" sort="Xue, Han" uniqKey="Xue H" first="Han" last="Xue">Han Xue</name>
</country>
</tree>
</affiliations>
</record>

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Brenneria populi sp. nov., isolated from symptomatic bark of Populus×euramericana canker.

Brenneria populi sp. nov., isolated from symptomatic bark of Populus×euramericana canker.

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